So we were looking to clean up and reorganize some of our code. Nothing was removed as far as references, we are NOT getting any errors, but after we published the site something as simple as the calendar control doesn't popup the calendar when you focus/click within the textbox. Now like I said nothing was removed as far as the references.
Ajax does work, if we revert back to previous project structure, server is configured correctly and working once we revert back. So its not a server configuration issue.
What id like to know is what can I look at to see how or why this is occurring? Since we are not getting any compilation errors or any errors at all, how can we determine what was broken or missing after moving things around?