Within the root of directory of my website I have created a Application Folder that I am building my .net application in. I have all my .net folders in my application folder, Bin, App_Code, etc. The Ajax ToolKit is installed in the Bin folder and registered in the web.config file. When I add a ModalPopupExtender or any other ToolKit control on my page .net does recognize it. However when I go to test in a browser the functionality does not work. I have tested the same page code in the root site of another application and it works. Is there something that needs to be done because I do not have the .net folders in the root of the site?
Thanks in advance for your help